species:   Artha
pid:       MI0015956
parent:    ath-MIR854e
paralog:   
locus:     5:11942467-11942687
matures:   ['GAUGAGGAUAGGGAGGAGGAG', 'UCUCUUCUACCACAGCUAUUCCG']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 5:11942467-11942687

2 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

***********************                                                                                                                                                                             *************************
CGGAUGAGGAUAGGGAGGAGGAGUAUGAUACGAGCAUGUAUCAUUUCAGUGAGCACGUACCUCCAGCGCGGGAGAGCAAGAGCUUGAGUGAAGCUCACAGAAACAACAGUAAGUUGCAGAGGUGGUGCAAGAAACAAGAUAGGUUACUUAUCAAGUGCUUCAAGGCCAUCACGUUUCUGACGGACAAGAUAAGUUGCUUCUCUUCUACCACAGCUAUUCCG
((((..((.....((((((((((((((((((......)))))).........((((.((((((....((......))..((((((.....)))))).......((((.....))))..)))))))))).................(((((((..((.(.(((((((......)))).))).).))..))))))))))))))))))).......))..))))
--GAUGAGGAUAGGGAGGAGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=21 a=0 c
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUCUUCUACCACAGCUAUUCCG l=23 a=0 c*
----------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGGCCAUCACGUUUCUGACGGA------------------------------------- l=24 a=1 ma
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUCUUCUACCACAGCUAUUCCG l=23 a=0 ma*

----------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGGCCAUCACGUUUCUGACGGA------------------------------------- l=24 a=1 (ma)

mb-00010
ax-1001111
ku-01
ss-110111101110
fn-011
